Protein–RNA interactions: Getting into the major groove
نویسندگان
چکیده
RNA–protein interactions are involved in many cellular processes, including information storage and transfer, catalysis and transcriptional activation. Our structural knowledge of these interactions at atomic resolution is based on X-ray crystallographic and nuclear magnetic resonance (NMR) studies (for a review see [1]). The crystal structures of a number of RNA–protein complexes have been reported, including those formed between three aminoacyl-tRNA synthetases and their cognate tRNAs, the RNA-binding domain of the U1A ribonucleoprotein and its target RNA sequence, and the bacteriophage MS2 coat protein and a specific RNA operator fragment. The NMR studies have been of small RNAs bound to individual amino acids or peptides.
منابع مشابه
A peptide interaction in the major groove of RNA resembles protein interactions in the minor groove of DNA.
A 17-amino acid arginine-rich peptide from the bovine immunodeficiency virus Tat protein has been shown to bind with high affinity and specificity to bovine immunodeficiency virus transactivation response element (TAR) RNA, making contacts in the RNA major groove near a bulge. We show that, as in other peptide-RNA complexes, arginine and threonine side chains make important contributions to bin...
متن کاملRNA base-amino acid interaction strengths derived from structures and sequences
We investigate RNA base-amino acid interactions by counting their contacts in structures and their implicit contacts in various functional sequences where the structures can be assumed to be preserved. These frequencies are cast into equations to extract relative interaction energetics. Previously we used this approach in considering the major groove interactions of DNA, and here we apply it to...
متن کاملthe major groove of RNA resembles protein interactions in the minor groove ofDNA
A 17-amino acid arginine-rich peptide from the bovine immunodeficiency virus Tat protein has been shown to bind with high affinity and specificity to bovine immunodeficiency virus transactivation response element (TAR) RNA, making contacts in the RNA major groove near a bulge. We show that, as in other peptide-RNA complexes, arginine and threonine side chains make important contributions to bin...
متن کاملThe molecular recognition of kink-turn structure by the L7Ae class of proteins.
L7Ae is a member of a protein family that binds kink-turns (k-turns) in many functional RNA species. We have solved the X-ray crystal structure of the near-consensus sequence Kt-7 of Haloarcula marismortui bound by Archaeoglobus fulgidus L7Ae at 2.3-Å resolution. We also present a structure of Kt-7 in the absence of bound protein at 2.2-Å resolution. As a result, we can describe a general mode ...
متن کاملThe NMR structure of the 5S rRNA E-domain-protein L25 complex shows preformed and induced recognition.
The structure of the complex between ribosomal protein L25 and a 37 nucleotide RNA molecule, which contains the E-loop and helix IV regions of the E-domain of Escherichia coli 5S rRNA, has been determined to an overall r.m.s. displacement of 1.08 A (backbone heavy atoms) by heteronuclear NMR spectroscopy (Protein Databank code 1d6k). The interacting molecular surfaces are bipartite for both the...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Current Biology
دوره 6 شماره
صفحات -
تاریخ انتشار 1996